Oli, thanks for the great job.
I have two comments
1) you might give a theoretical justification to the new "R" formula
RRold = (noNMR + noCD)/2
R = 100 - 2.5*(100-RRold)
by first noting that (for RRold not too far from 100) it's quite close to
100*[(RRold/100)^2.5],
and then remembering that p^N is the probability that an event with probability p (e.g., regular submission of orders by the player) happens N times in a row (e.g. in a game with N phases). So, if you neglect the (rather large) difference between noCD and noNMR, the "R" formula somewhat gives you the probability that the player will not cause trouble in a game of ~ 2.5 turns (btw, I'd use an even larger factor.. at least 5; but that's a detail).
2) on a quite different topic, Joseph the most Excellent was suggesting to have separate rankings for takeovers, since TOs positions are usually "doomed".
I agree with that request; however, I would be very careful in saying that a victory from a TO position would "say something about my skill as a player". In fact, there are cases where you take over decent or even excellent positions (just an example: http://vdiplomacy.net/board.php?
gameID=15663 )